Software

Argo
Software developed by the Broad Institute for visualizing and manually annotating whole genomes. Free for research and educational users
http://www.broad.mit.edu/annotation/argo/

BioKin, Ltd.
Offers script-driven programming for data analysis in viral dynamics, enzyme kinetics, receptor binding and drug discovery screening. Includes demo download, technical support and contacts for consulting in Pullman, Washington.
http://www.biokin.com/

Blue Tractor Software
Java based commercial software for DNA and Protein sequence analysis. Demo available.
http://www.bluetractorsoftware.co.uk

DNA Sequencing Software
software to improve the quality of DNA sequencing traces collected on the ABI 3700 and 3730 DNA sequencers.
http://www.nucleics.com/DNA_sequencing_tools/DNA_sequencing_tools.html

DoMix Scientific Software
Offers software for sequence alignment, phylogenetic tree visualization, contig assembly and sequence proof reading
http://science.do-mix.de/index.php

EnzymeX
Free MacOS X program for molecular biologists that can be used to determine which restriction enzymes cut a DNA sequence. Includes list of all commercially available RE.
http://www.mekentosj.com/enzymex/

FinchTV
Free DNA sequencing chromatogram trace viewer. Runs on Window, MacOS X, Linux and Solaris. Uses QT library.
http://www.geospiza.com/finchtv/

Insilico Biotechnology
Offering predictive software tools and services for metabolic engineering and drug discovery. Based in Germany.
http://www.insilico-biotechnology.com/

JaMBW
Java based biologist's workbench by Luca I.G.Toldo.
http://www.bioinformatics.org/JaMBW/

MacVector
Macintosh software which provide sequence editing, primer design, database searching, protein analysis, alignment, phylogeny, and other functions.
http://www.macvector.com

Mekentosj software
Free MacOS X programs for molecular biologists. Offers 4Peaks - a DNA sequencing trace viewer, iRNAi - RNAi design, and LabAssistant - lab timer/organizer.
http://www.mekentosj.com/programs/

Molecular Biology Software Links
Links to biological software for DNA sequencing, molecule modeling, polymerase chain reaction and taxonomy.
http://www.yk.rim.or.jp/~aisoai/soft.html

Phenosystems
Offers the Gensearch software to locate and analyse potential mutation locations.
http://www.phenosystems.com

SoftZymics
Package for statistical analysis of steady-state enzyme kinetic data, and presentation graphics, for Macintosh or Windows based computers. Previews, price and form to order from Princeton, New Jersey.
http://www.softzymics.com/

StarBiochem
StarBiochem is an application that displays molecules from the Protein Data Bank. It allows users to explore fundamental biological research concepts, select parts of the molecule and control how the selected parts are displayed.
http://web.mit.edu/star/biochem/